Saturday, April 12, 2008

SGX 2 blacks crows verses Dow Jones Industrial Index Fallout



The 2 black crows and inverted hammer reversal candlesticks pattern confirmation will be tested on Monday when bearish sentiments from Dow Jones Industrial Index 256.56 Friday fall floods the market. The 50 days EMA and red downtrend resistance line will cap any bullish upthrust. The major resistances at $9 and $10 are giant stumbling blocks that will not be challenged in the coming weeks and price will probably gravitate downwards to cover the gaps at $7.67, $6.91 and $6.45

Chromosome Numbers

  • All animals have a characteristic number of chromosomes in their body cells called the diploid (or 2n) number.
  • These occur as homologous pairs, one member of each pair having been acquired from the gamete of one of the two parents of the individual whose cells are being examined.
  • The gametes contain the haploid number (n) of chromosomes.

(In plants, the haploid stage takes up a larger part of its life cycle - Link)

Diploid numbers of some commonly studied organisms
(as well as a few extreme examples)
Homo sapiens (human)46
Mus musculus (house mouse)40
Drosophila melanogaster (fruit fly)8
Caenorhabditis elegans (microscopic roundworm)12
Saccharomyces cerevisiae (budding yeast)32
Arabidopsis thaliana (plant in the mustard family)10
Xenopus laevis (South African clawed frog)36
Canis familiaris (domestic dog)78
Gallus gallus (chicken)78
Zea mays (corn or maize)20
Muntiacus reevesi (the Chinese muntjac, a deer)23
Muntiacus muntjac (its Indian cousin)6
Myrmecia pilosula (an ant)2
Parascaris equorum var. univalens (parasitic roundworm)2
Cambarus clarkii (a crayfish)200
Equisetum arvense (field horsetail, a plant)216

http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/C/Chromosomes.html

Watson and DNA: Making a Scientific Revolution

If you have ever had the notion that science is dull business, this book will change your mind. Hardly your stereotypical scientist in a white lab coat, James Watson in his prime was fiercely competitive, brash, and irreverent, and caused controversy wherever he went, simultaneously inspiring and exasperating his colleagues. His arrogance, lack of tact, and love of gossip were only overshadowed by his passion, drive, and genius, allowing him to attract the most brilliant thinkers (and generous funding) to his projects. On the cutting edge of molecular biology since the mid1950s, Watson, along with collaborator Francis Crick, won the Nobel Prize in 1962 for discovering the double-helix structure of DNA. In 1965 he wrote Molecular Biology of the Gene, his textbook on molecular biology, followed by his controversial and entertaining The Double Helix in 1968. An "intellectual manager" on a grand scale, he built Cold Spring Harbor Laboratory into one of the great biological centers of the world and was chosen in 1988 by the National Academy of Sciences to be the first director of the Human Genome Project.

Since Watson chose not to cooperate with Victor McElheny, neither he nor his family were interviewed for the book, but this does not detract from the work, since the author focuses strictly on Watson's professional life anyway. And McElheny is certainly qualified to do so: not only did he work with Watson for four years, he has also been a science reporter for over four decades. He bases his book on personal observations and on extensive interviews with nearly 50 scientists who have worked closely with Watson. McElheny details the past half-century of breakthroughs with considerable color and a wealth of revealing anecdotes. A self-declared optimist most interested in using science to "improve human life," Watson placed himself on the frontlines of the war on cancer in order to make the largest possible impact. In doing so, writes McElheny, he "may have influenced the thinking of biologists more than any other scientist during this half-century." A fascinating portrait of a remarkable man. --Shawn Carkonen

James Watson's The Double Helix, an account of his discovery with Francis Crick of the structure of DNA, is one of the bestselling scientific memoirs of all time. Science journalist McElheny, author of a biography of photography pioneer Edwin Land (Insisting on the Impossible), fills in the details of Watson's early career, before his Nobel Prize- winning discovery, and tracks his many achievements over the following half-century. Watson's work as an administrator, most notably of the Cold Spring Harbor labs on Long Island, and as a mentor to young scientists, has been as important as his own scientific work. Not one to rest on his laurels, Watson moved on from studying the structure of DNA to investigate recombinant DNA and the genetic causes of cancer. Most recently, he led the Human Genome Project, until political pressures forced his resignation. McElheny manages to convey Watson's complex personality: confident to the point of arrogance and infamous for alienating coworkers, Watson knew the impact of the "mad scientist" look on politicians and wealthy donors: more than one observer described him mussing up his hair and untying his tennis shoes before going in to give a presentation. However, readers interested in Watson's private life (he didn't marry until he was nearly 40) or psychobiography will have to look elsewhere. McElheny worked under Watson for a time and comes perilously close to hagiography. Those who work in the sciences or who knew Watson will find this biography informative, but the general science buff will probably find it less satisfying than going back and rereading The Double Helix.

http://www.amazon.com/Watson-DNA-Making-Scientific-Revolution/dp/0738203416/ref=sid_dp_dp



Chromosome History

This is a brief history of research in a complex field where each advance was hard won, and often hotly disputed at the time.

Visual discovery of chromosomes. Textbooks have often said that chromosomes were first observed in plant cells by a Swiss botanist named Karl Wilhelm von Nägeli in 1842.[1] However, this opinion has been challenged, perhaps decisively, by Henry Harris, who has freshly reviewed the primary literature.[2] In his opinion the claim of Nägeli to have seen spore mother cells divide is mistaken, as are some of his interpretations. Harris considers other candidates, especially Wilhelm Hofmeister, whose publications in 1848-9 include plates which definitely show mitotic events.[3][4] Hofmeister was also the choice of Cyril Darlington.

The work of other cytologists such as Walther Flemming, Eduard Strasburger, Otto Bütschli, Oskar Hertwig and Carl Rabl should definitely be acknowledged. The use of basophilic aniline dyes was a new technique for effectively staining the chromatin material in the nucleus. Their behavior in animal (salamander) cells was later described in detail by Walther Flemming, who in 1882 "provided a superb summary of the state of the field".[5][6] The name chromosome was invented in 1888 by Heinrich von Waldeyer. However, van Beneden's monograph of 1883 on the fertilised eggs of the parasitic roundworm Ascaris megalocephala was the outstanding work of this period.[7] His conclusions are classic:

  • Thus there is no fusion between the male chromatin and the female chromatin at any stage of division...
  • The elements of male origin and those of female origin are never fused together in a cleavage nucleus, and perhaps they remain distinct in all the nuclei derived from them. [tranl: Harris p162]

"It is not easy to identify who first discerned chromosomes during mitosis, but there is no doubt that those who first saw them had no idea of their significance... [but] with the work of Balbiani and van Beneden we move away from... the mechanism of cell division to a precise delineation of chromosomes and what they do during the division of the cell." [8]

Van Beneden's master work was closely followed by that of Carl Rabl, who reached similar conclusions. [9] This more or less concludes the first period, in which chromosomes were visually sighted, and the morphological stages of mitosis were described. Coleman also gives a useful review of these discoveries.[10]

Nucleus as the seat of heredity. The origin of this epoch-making idea lies in a few sentences tucked away in Ernst Haeckel's Generelle Morphologie of 1866.[11] The evidence for this insight gradually acumulated until, after twenty or so years, two of the greatest in a line of great German scientists spelt it out. August Weismann proposed that the germ line was separate from the soma, and that the cell nucleus was the repository of the hereditary material, which he proposed was arranged along the chromosomes in a linear manner. Furthermore, he proposed that at fertilisation a new combination of chromosomes (and their hereditary material) would be formed. This was the explanation for the reduction division of meiosis (first described by van Beneden).

Chromosomes as vectors of heredity. In a series of outstanding experiments, Theodor Boveri gave the definitive demonstration that chromosomes were the vectors of heredity. His two principles were:

The continuity of chromosomes
The individuality of chromosomes.

It was the second of these principles which was so original. He was able to test the proposal put forward by Wilhelm Roux, that each chromosome carries a different genetic load, and showed that Roux was right. Upon the rediscovery of Mendel, Boveri was able to point out the connection between the rules of inheritance and the behaviour of the chromosomes. It is interesting to see that Boveri influenced two generations of American cytologists: Edmund Beecher Wilson, Walter Sutton and Theophilus Painter were all influenced by Boveri (Wilson and Painter actually worked with him). In his famous textbook The Cell, Wilson linked Boveri and Sutton together by the Boveri-Sutton theory. Mayr remarks that the theory was hotly contested by some famous geneticists: William Bateson, Wilhelm Johannsen, Richard Goldschmidt and T.H. Morgan, all of a rather dogmatic turn of mind. Eventually complete proof came from chromosome maps – in Morgan's own lab! [12]

http://en.wikipedia.org/wiki/Chromosome

Definition of Chromosome

Chromosome: A visible carrier of the genetic information.

The 3 billion bp (base pairs) in the human genome are organized into 24 distinct, physically separate microscopic units called chromosomes. All genes are arranged linearly along the chromosomes. The nucleus of most human cells contains two sets of chromosomes, one set given by each parent. Each set has 23 single chromosomes--22 autosomes and an X or Y sex chromosome. (A normal female will have a pair of X chromosomes; a male will have an X and Y pair.) Chromosomes contain roughly equal parts of protein and DNA; chromosomal DNA contains an average of 150 million bases. DNA molecules are among the largest molecules now known.

Chromosomes can be seen under a light microscope and, when stained with certain dyes, reveal a pattern of light and dark bands reflecting regional variations in the amounts of A and T vs G and C. Differences in size and banding pattern allow the 24 chromosomes to be distinguished from each other, an analysis called a karyotype. A few types of major chromosomal abnormalities, including missing or extra copies or gross breaks and rejoinings (translocations), can be detected by microscopic examination; Down's syndrome, in which an individual's cells contain a third copy of chromosome 21, is diagnosed by karyotype analysis.

Most changes in DNA, however, are too subtle to be detected by this technique and require molecular analysis. These subtle DNA abnormalities (mutations) are responsible for many inherited diseases such as cystic fibrosis and sickle cell anemia or may predispose an individual to cancer, major psychiatric illnesses, and other complex diseases.

The foregoing definition and discussion pertain to the chromosomes in the nucleus of the cell. The chromosome of the mitochondrion, which is in the cytoplasm of the cell, is a somewhat different story.

http://www.medterms.com/script/main/art.asp?articlekey=14018

Genetics Science Learning Center

This is a cool website using Flash to answer the following genetics questions

What is DNA?

http://learn.genetics.utah.edu/units/basics/tour/dna.swf

What is gene?

http://learn.genetics.utah.edu/units/basics/tour/gene.swf

What is chromosome?

http://learn.genetics.utah.edu/units/basics/tour/chromosome.swf

Chromosomes

Composition

In eukaryotes, chromosomes consist of a single molecule of DNA [Link to visual proof] associated with:
  • many copies of 5 kinds of histones. Histones are proteins rich in lysine and arginine residues and thus positively-charged. For this reason they bind tightly to the negatively-charged phosphates in DNA.
  • a small number of copies of many different kinds of non-histone proteins. Most of these are transcription factors that regulate which parts of the DNA will be transcribed into RNA.

Structure

  • For most of the life of the cell, chromosomes are too elongated and tenuous to be seen under a microscope.
  • Before a cell gets ready to divide by mitosis, each chromosome is duplicated (during S phase of the cell cycle).
  • As mitosis begins, the duplicated chromosomes condense into short (~ 5 µm) structures which can be stained and easily observed under the light microscope.
  • These duplicated chromosomes are called dyads.
  • When first seen, the duplicates are held together at their centromeres. In humans, the centromere contains ~1 million base pairs of DNA. Most of this is repetitive DNA: short sequences (e.g., 171 bp) repeated over and over in tandem arrays.
  • While they are still attached, it is common to call the duplicated chromosomes sister chromatids, but this should not obscure the fact that each is a bona fide chromosome with a full complement of genes.
  • The kinetochore is a complex of proteins that forms at each centromere and serves as the attachment point for the spindle fibers that will separate the sister chromatids as mitosis proceeds into anaphase.
  • The shorter of the two arms extending from the centromere is called the p arm; the longer is the q arm.
  • Staining with the trypsin-giemsa method reveals a series of alternating light and dark bands called G bands.
  • G bands are numbered and provide "addresses" for the assignment of gene loci.
http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/C/Chromosomes.html

Human Chromosomes


Legend:

Representation of the 23 paired chromosomes of the human male.

Chromosome: a very long DNA molecule and associated proteins, that carry portions of the hereditary information of an organism.

a. Structure of a chromosome (Typical metaphase chromosome):
A chromosome is formed from a single DNA molecule that contains many genes. A chromosomal DNA molecule contains three specific nucleotide sequences which are required for replication: a DNA replication origin; a centromere to attach the DNA to the mitotic spindle.; a telomere located at each end of the linear chromosome.

The DNA molecule is highly condensed. The human DNA helix occupy too much space in the cell. Small proteins are responsible for packing the DNA into units called nucleosomes.

b. Stained chromosomes:
Chromosomes are stained with A-T (G bands) and G-C (R bands) base pair specific dyes.
When they are stained, the mitotic chromosomes have a banded structure that unambiguously identifies each chromosome of a karyotype. Each band contains millions of DNA nucleotide pairs which do not correspond to any functional structure.
Adapted from K.F. Jorgenson, J.H. van de Sande, and C.C. Lin, Chromosoma 68:287-302, 1978.

c. Karyotype of a male:
The human haploid genome contains 3,000,000,000 DNA nucleotide pairs, divided among twenty two (22) pairs of autosomes and one pair of sex chromosomes.

http://www.accessexcellence.org/RC/VL/GG/human.html

Chromosome

Chromosomes are organized structures of DNA and proteins that are found in cells. A chromosome is a continuous piece of DNA, which contains many genes, regulatory elements and other nucleotide sequences. Chromosomes also contain DNA-bound proteins, which serve to package the DNA and control its functions. The word chromosome comes from the Greek χρῶμα (chroma, color) and σῶμα (soma, body) due to their property of being stained very strongly by some dyes.

Chromosomes vary extensively between different organisms. The DNA molecule may be circular or linear, and can contain anything from tens of kilobase pairs to hundreds of megabase pairs. Typically eukaryotic cells (cells with nuclei) have large linear chromosomes and prokaryotic cells (cells without defined nuclei) have smaller circular chromosomes, although there are many exceptions to this rule. Furthermore, cells may contain more than one type of chromosome; for example mitochondria in most eukaryotes and chloroplasts in plants have their own small chromosomes.

In eukaryotes, nuclear chromosomes are packaged by proteins into a condensed structure called chromatin. This allows the massively-long DNA molecules to fit into the cell nucleus. The structure of chromosomes and chromatin varies through the cell cycle. Chromosomes may exist as either duplicated or unduplicated—unduplicated chromosomes are single linear strands, while duplicated chromosomes (copied during S phase) contain two copies joined by a centromere. Compaction of the duplicated chromosomes during mitosis and meiosis results in the classic four-arm structure (pictured to the right).

"Chromosome" is a rather loosely defined term. In prokaryotes, a small circular DNA molecule may be called either a plasmid or a small chromosome. These small circular genomes are also found in mitochondria and chloroplasts, reflecting their bacterial origins. The simplest chromosomes are found in viruses: these DNA or RNA molecules are short linear or circular chromosomes that often lack any structural proteins.

Diagram of a duplicated and condensed (metaphase) eukaryotic chromosome. (1) Chromatid - one of the two identical parts of the chromosome after S phase. (2) Centromere - the point where the two chromatids touch, and where the microtubules attach. (3) Short arm. (4) Long arm.
Diagram of a duplicated and condensed (metaphase) eukaryotic chromosome. (1) Chromatid - one of the two identical parts of the chromosome after S phase. (2) Centromere - the point where the two chromatids touch, and where the microtubules attach. (3) Short arm. (4) Long arm.

http://en.wikipedia.org/wiki/Chromosome